rs12658906 chr5:123397701 G>C
- Sequence
atttcctgataaaaatctttacct[G/C]atgtaccttgcaagtcaaataaaa
- ASB in cell types
- VCaP (prostate carcinoma) CWR22 (prostate carcinoma) 22RV1 (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ANDR_HUMAN GCR_HUMAN FOXA1_HUMAN PRGR_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.53 | -0.14 | 2.09 | n/a | No Hit | |||
| GCR_HUMAN | 2.21 | n/a | 3.00 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.60 | -0.15 | 2.22 | n/a | No Hit | |||
| PRGR_HUMAN | 1.27 | -3.04 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, birth weight, body mass index (bmi), diastolic blood pressure (dbp), height, microalbuminuria, systolic blood pressure (sbp), total cholesterol, triglycerides, urinary albumin-to-creatinine ratio, years of education
GTEx eQTL Cells_Cultured_fibroblasts, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Thyroid