rs12692386 chr2:9555777 A>G
- Sequence
tctaccgccaggctcgacgccccc[A/G]gaagtgcaggtggcgttaccaaag
- ASB in cell types
- HepG2 (hepatoblastoma) VCaP (prostate carcinoma) keratinocytes liver
- ASB for transcription factors
- SNAI2_HUMAN CTCF_HUMAN MAX_HUMAN E2F6_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | n/a | 3.74 | 1.50 | n/a | No Hit | |||
| CTCF_HUMAN | 0.76 | 1.41 | 1.56 | 0.22 | Weak Concordant | |||
| MAX_HUMAN | 1.95 | 0.90 | 1.45 | n/a | No Hit | |||
| E2F6_HUMAN | 2.20 | -2.01 | 1.33 | n/a | No Hit | |||
| GABPA_HUMAN | 1.07 | 2.19 | 1.77 | 7.77 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Liver, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Uterus