rs12710562 chr22:37633716 A>G
- Sequence
caccccccgggccctgcaccggaa[A/G]aggccctgcaaaggggcctgtggc
- ASB in cell types
- GM12878 (female B-cells) A-673 clone Asp114 (Ewing sarcoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- RB_HUMAN FLI1_HUMAN FOXK2_HUMAN BHE40_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RB_HUMAN | n/a | 2.15 | 1.00 | n/a | n/a | |||
| FLI1_HUMAN | -1.87 | 2.10 | 1.33 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.73 | -1.38 | 1.33 | n/a | n/a | |||
| BHE40_HUMAN | -1.35 | 1.14 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, total cholesterol, total cholesterol change with statins, triglycerides change with statins, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood