rs12779061 chr10:133144010 T>C
- Sequence
gggacatggtgagtgacaagtgac[T/C]acaaggcaagtgcgtgagccttct
- ASB in cell types
- A549 (lung carcinoma) foreskin keratinocyte HepG2 (hepatoblastoma) CD14+ monocytes
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN ZN205_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.84 | 0.63 | 1.56 | n/a | No Hit | |||
| RAD21_HUMAN | 1.23 | -0.38 | 1.77 | n/a | n/a | |||
| SMC3_HUMAN | 1.05 | -0.21 | 1.88 | n/a | n/a | |||
| ZN205_HUMAN | 1.47 | -1.75 | 1.33 | n/a | n/a | |||
| STAT1_HUMAN | 1.65 | -1.52 | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Cerebellum, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid