rs12796441 chr11:133930878 C>A
- Sequence
gctgcactgacttaggaagggagc[C/A]cgcagagtgcagcggccaccaggg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) adrenal gland LNCaP (prostate carcinoma) gastroesophageal sphincter
- ASB for transcription factors
- CTCF_HUMAN PRDM9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.16 | 1.20 | 1.38 | -3.92 | Discordant | |||
| PRDM9_HUMAN | -0.62 | 1.80 | 2.00 | n/a | n/a |
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Motif analysis
