rs12879977 chr14:106309134 C>T
- Sequence
gccacctggtggttctgagcgccc[C/T]ctggtggttctgagcgccccctgg
- ASB in cell types
- KMS-11 GM12878 (female B-cells) T47D (invasive ductal carcinoma) transverse colon
- ASB for transcription factors
- CTCF_HUMAN CTCFL_HUMAN FOXK2_HUMAN KAISO_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.28 | 1.06 | 1.47 | -0.90 | Weak Concordant | |||
| CTCFL_HUMAN | 1.41 | -1.44 | 1.33 | -3.36 | Concordant | |||
| FOXK2_HUMAN | 2.12 | -1.92 | 1.33 | n/a | n/a | |||
| KAISO_HUMAN | -2.25 | 2.04 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Cells_EBV-transformed_lymphocytes, Colon_Transverse, Lung, Small_Intestine_Terminal_Ileum, Stomach, Whole_Blood