rs12882 chr17:75779744 G>A
- Sequence
ccgcagtcgacgagcgaaaaacca[G/A]caccgcccaacgaacgaccaaacc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) A549 (lung carcinoma) SK-N-SH (neuroblastoma) Th2-cells
- ASB for transcription factors
- JUN_HUMAN BCL3_HUMAN PML_HUMAN MAF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 0.29 | 2.02 | 2.89 | n/a | No Hit | |||
| BCL3_HUMAN | -0.09 | 1.75 | 3.00 | n/a | n/a | |||
| PML_HUMAN | 1.73 | -2.04 | 1.50 | n/a | n/a | |||
| MAF_HUMAN | 1.56 | -1.09 | 2.25 | n/a | No Hit | |||
| TF65_HUMAN | 1.20 | -0.25 | 2.25 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood