rs12889775 chr14:76959734 G>T
- Sequence
acttcatttaccaaccctggaacc[G/T]cagacctctgggcttcctggtatg
- ASB in cell types
- GM12878 (female B-cells) HEK293 (embryonic kidney)
- ASB for transcription factors
- ZN394_HUMAN RUNX3_HUMAN MTA2_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN394_HUMAN | 2.80 | n/a | 1.33 | n/a | No Hit | |||
| RUNX3_HUMAN | 2.64 | n/a | 1.33 | -1.25 | Weak Concordant | |||
| MTA2_HUMAN | 1.55 | -1.83 | 1.33 | n/a | n/a | |||
| IKZF2_HUMAN | 1.42 | -0.99 | 1.33 | n/a | n/a | |||
| BHE40_HUMAN | 1.99 | -1.89 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Prostate, Uterus, Vagina