rs12893031 chr14:24806444 C>A
- Sequence
ctcgtccatgcctgttaaaaggag[C/A]tgtgttttatttttccactccagg
- ASB in cell types
- HepG2 (hepatoblastoma) A549 (lung carcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.49 | 0.74 | 1.42 | n/a | No Hit | |||
| SMC3_HUMAN | -0.36 | 1.35 | 1.93 | n/a | n/a | |||
| RAD21_HUMAN | 0.10 | 1.03 | 1.79 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, rheumatoid arthritis, triglycerides