rs12897485 chr14:21668597 T>C
- Sequence
atatcctcttcatatcccagttga[T/C]tcaccacattccattctgctacac
- ASB in cell types
- LHSAR (prostate epithelial cells) HEK293 (embryonic kidney) coronary artery smooth muscle
- ASB for transcription factors
- ANDR_HUMAN JUND_HUMAN JUN_HUMAN FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.22 | 3.49 | 1.50 | n/a | No Hit | |||
| JUND_HUMAN | -2.77 | 2.45 | 1.33 | 3.08 | Concordant | |||
| JUN_HUMAN | -1.76 | 2.04 | 1.33 | 5.83 | Concordant | |||
| FOXA2_HUMAN | -2.43 | 2.01 | 1.50 | n/a | No Hit | |||
| ZN629_HUMAN | -2.78 | 2.07 | 1.50 | n/a | n/a |
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Motif analysis
