rs12902026 chr15:77910695 G>A
- Sequence
gggacggaacggaagatgccgggg[G/A]tggatggaagtcagtgccctttgg
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) foreskin keratinocyte MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN ARI1B_HUMAN NFIC_HUMAN ZN143_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.75 | -0.40 | 2.18 | n/a | No Hit | |||
| ARI1B_HUMAN | 2.71 | n/a | 2.00 | n/a | n/a | |||
| NFIC_HUMAN | 2.76 | n/a | 2.00 | 0.34 | Weak Discordant | |||
| ZN143_HUMAN | 2.22 | -2.52 | 1.33 | n/a | No Hit | |||
| RING2_HUMAN | 2.60 | n/a | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina