rs12932628 chr16:89566317 G>T
- Sequence
atcggggatagtctcaggaggcac[G/T]agtcgcctgcctcggtgatgcacc
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells) K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- BHE40_HUMAN RING2_HUMAN MEF2B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BHE40_HUMAN | 2.52 | 1.00 | 1.67 | -5.03 | Concordant | |||
| RING2_HUMAN | 2.96 | n/a | 2.00 | n/a | n/a | |||
| MEF2B_HUMAN | 2.18 | -2.49 | 1.33 | n/a | No Hit |
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Motif analysis
