rs12935405 chr16:57300448 T>C
- Sequence
caagacatcataacctcactgatc[T/C]gcggtgttgatgaggaaaagtaat
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) A549 (lung carcinoma) foreskin keratinocyte
- ASB for transcription factors
- MNT_HUMAN AFF1_HUMAN SMC3_HUMAN NRF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | -0.37 | 1.66 | 2.00 | n/a | n/a | |||
| AFF1_HUMAN | -3.20 | 2.12 | 2.25 | n/a | n/a | |||
| SMC3_HUMAN | 0.82 | -0.42 | 2.00 | n/a | n/a | |||
| NRF1_HUMAN | 0.32 | 0.41 | 1.88 | n/a | No Hit | |||
| GATA1_HUMAN | 1.61 | -0.81 | 2.00 | n/a | No Hit |
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