rs12936794 chr17:20009257 C>T
- Sequence
ccggctgaaggaggacggcgcagg[C/T]ggcggtccgggtactacatctccc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) foreskin keratinocyte keratinocytes T47D (invasive ductal carcinoma)
- ASB for transcription factors
- SNAI2_HUMAN CTCF_HUMAN ZN143_HUMAN AP2A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | -2.92 | 2.35 | 1.50 | 4.31 | Concordant | |||
| CTCF_HUMAN | 0.49 | 0.87 | 1.63 | n/a | No Hit | |||
| ZN143_HUMAN | n/a | 2.07 | 2.00 | n/a | No Hit | |||
| AP2A_HUMAN | 1.79 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood