rs12940625 chr17:15100140 G>A
- Sequence
catggatgcaatgcaaacatgcaa[G/A]gtaaacattgagggaagactgctc
- ASB in cell types
- VCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.08 | 1.71 | 1.93 | 4.62 | Concordant |
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Motif analysis
