rs12944051 chr17:78399775 A>G
- Sequence
ttagtctgtgctggccactcaggt[A/G]tgttgtctgtttccaccctcagtg
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- SKI_HUMAN TEAD3_HUMAN FOXK2_HUMAN RARA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SKI_HUMAN | 3.25 | n/a | 2.00 | n/a | n/a | |||
| TEAD3_HUMAN | 2.93 | n/a | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | 2.58 | -0.89 | 1.67 | n/a | n/a | |||
| RARA_HUMAN | 2.85 | n/a | 2.00 | n/a | No Hit | |||
| SMAD4_HUMAN | 2.72 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), hdl cholesterol, nicotine dependence (smoking), smoking cessation in a trial of precessation nicotine replacement, total cholesterol, triglycerides
GTEx eQTL Artery_Aorta, Brain_Cortex, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Muscle_Skeletal, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg