rs12963151 chr18:9404748 C>G
- Sequence
taccggtaattactgcttccaccc[C/G]cagttctaggcaaagagcaaggcc
- ASB in cell types
- K562 (myelogenous leukemia) SKH1 (chronic myelogenous leukemia, BCR-ABL1 positive)
- ASB for transcription factors
- EGR1_HUMAN TAL1_HUMAN MITF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | 2.14 | -1.58 | 1.33 | -4.98 | Concordant | |||
| TAL1_HUMAN | -0.79 | 0.97 | 1.46 | n/a | No Hit | |||
| MITF_HUMAN | 1.75 | -1.78 | 1.33 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Nerve_Tibial, Testis