rs12971661 chr19:19696628 A>G
- Sequence
cagacaccaggaggctgcccccta[A/G]ctgaactaaattctgatgctactt
- ASB in cell types
- H1 (embryonic stem cells)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -2.13 | 2.05 | 1.33 | 3.30 | Concordant | |||
| RAD21_HUMAN | -1.49 | 1.57 | 1.33 | n/a | n/a |
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Motif analysis
