rs12975442 chr19:7853033 C>T
- Sequence
gggcaacagggctcgggcggcccc[C/T]ggtggtcagggcctgcatgttggt
- ASB in cell types
- VCaP (prostate carcinoma) K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) epithelial cell of prostate
- ASB for transcription factors
- CTCF_HUMAN FOXA1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.06 | 1.63 | 1.72 | 4.34 | Concordant | |||
| FOXA1_HUMAN | n/a | 1.85 | 1.33 | n/a | No Hit | |||
| ANDR_HUMAN | -0.27 | 1.28 | 1.44 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood