rs12976696 chr19:33406937 C>G
- Sequence
cctagccaggctggccacccaccc[C/G]ccatgcccaggagcaacacaaaag
- ASB in cell types
- A549 (lung carcinoma) cranial neural crest cells
- ASB for transcription factors
- SMC3_HUMAN RAD21_HUMAN AP2A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | 1.10 | -0.18 | 1.46 | n/a | n/a | |||
| RAD21_HUMAN | 0.99 | 0.06 | 1.57 | n/a | n/a | |||
| AP2A_HUMAN | 2.38 | -3.27 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid