rs12984612 chr19:48255834 T>G
- Sequence
aagcagcaggtggtgactttaggg[T/G]aggacgggccaaatgggagaatcc
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) A549 (lung carcinoma) lymphoblastoid cells
- ASB for transcription factors
- CTCF_HUMAN TYY1_HUMAN GABPA_HUMAN ZBT40_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.04 | 0.26 | 1.35 | n/a | No Hit | |||
| TYY1_HUMAN | 1.83 | -0.18 | 1.33 | n/a | No Hit | |||
| GABPA_HUMAN | 1.72 | -1.23 | 1.33 | n/a | No Hit | |||
| ZBT40_HUMAN | 0.76 | -1.60 | 1.33 | n/a | n/a | |||
| MAFK_HUMAN | 2.06 | -2.30 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood