rs13017912 chr2:235505410 C>G
- Sequence
cagtgtgtgcgtgtgtggatttct[C/G]tggtggctttgcaatggcaaatat
- ASB in cell types
- HepG2 (hepatoblastoma) breast tumor tissue
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN SMAD4_HUMAN FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.49 | 1.51 | 2.50 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.47 | 1.48 | 1.83 | n/a | No Hit | |||
| SMAD4_HUMAN | -3.47 | 2.47 | 2.00 | n/a | No Hit | |||
| FOXA2_HUMAN | -0.75 | 1.05 | 1.67 | n/a | No Hit | |||
| BCL6_HUMAN | -2.08 | 2.13 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid