rs13053829 chr22:31107574 C>T
- Sequence
gagtcgctgcgccacgtctgggcc[C/T]ccaggctggccccgcccccgcccc
- ASB in cell types
- HEK293 (embryonic kidney) LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SP2_HUMAN SCRT2_HUMAN SP3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.61 | 2.72 | 1.40 | n/a | No Hit | |||
| SP2_HUMAN | n/a | 3.38 | 2.00 | -1.32 | Weak Discordant | |||
| SCRT2_HUMAN | n/a | 3.31 | 2.00 | n/a | n/a | |||
| SP3_HUMAN | -3.88 | 2.50 | 2.00 | -1.28 | Weak Discordant | |||
| ZBT26_HUMAN | -1.97 | 2.32 | 2.00 | n/a | n/a |
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Motif analysis
