rs13061474 chr3:141894988 G>A
- Sequence
cacgtgagtaatgcattgtgttgc[G/A]acatcactaggccataggaatttt
- ASB in cell types
- HepG2 (hepatoblastoma) Ishikawa (endometrial adenocarcinoma)
- ASB for transcription factors
- CEBPA_HUMAN CEBPB_HUMAN SOX13_HUMAN CEBPG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPA_HUMAN | 1.56 | -0.40 | 1.50 | 5.13 | Discordant | |||
| CEBPB_HUMAN | 1.70 | -1.02 | 1.80 | 0.83 | Weak Discordant | |||
| SOX13_HUMAN | 1.96 | -2.26 | 1.50 | n/a | n/a | |||
| CEBPG_HUMAN | 1.98 | -2.30 | 1.50 | 2.30 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Stomach, Whole_Blood