rs1314 chr22:24526484 T>G
- Sequence
gtgcttggcgagagttcctgacag[T/G]ctgcccttctgatagcctgcctca
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ESR1_HUMAN FOS_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.03 | 1.32 | 1.63 | 0.52 | Weak Concordant | |||
| FOS_HUMAN | -2.24 | 1.97 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP amyotrophic lateral sclerosis (als), comorbid depressive syndrome and alcohol dependence, hypertension (early onset hypertension), microalbuminuria, partial epilepsy, schizophrenia
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood