rs13143 chr16:31477712 C>T
- Sequence
ccccgcccctaaggtactatgagt[C/T]ctcaggggtcaagttcagaaacgg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- NRF1_HUMAN MGAP_HUMAN ARI1B_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 2.09 | n/a | 2.00 | n/a | No Hit | |||
| MGAP_HUMAN | 2.18 | n/a | 2.00 | n/a | n/a | |||
| ARI1B_HUMAN | 2.22 | -1.89 | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | 1.41 | n/a | 1.33 | n/a | n/a | |||
| KDM1A_HUMAN | 1.48 | -1.47 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Whole_Blood