rs13150320 chr4:173227960 A>G
- Sequence
tttgtggccataaatattgtttct[A/G]tgagcctcttttcagctgtgctag
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- PBX2_HUMAN EMSY_HUMAN MAFG_HUMAN NFIC_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PBX2_HUMAN | n/a | 3.15 | 2.50 | n/a | No Hit | |||
| EMSY_HUMAN | -2.38 | 2.43 | 2.00 | n/a | n/a | |||
| MAFG_HUMAN | -1.99 | 2.22 | 2.00 | n/a | No Hit | |||
| NFIC_HUMAN | -2.02 | 2.08 | 2.00 | n/a | No Hit | |||
| MITF_HUMAN | n/a | 1.87 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP diastolic blood pressure (dbp), height, infant head circumference, systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Muscularis, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood