rs13178686 chr5:61408986 C>G
- Sequence
gcgtgtgtgtgactgacccgaccg[C/G]gcagaggcggggtggcacaagatt
- ASB in cell types
- GM12878 (female B-cells) foreskin keratinocyte CD14+ monocytes HepG2 (hepatoblastoma)
- ASB for transcription factors
- STAT1_HUMAN CTCF_HUMAN CREB1_HUMAN AP2A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.32 | n/a | 2.50 | n/a | No Hit | |||
| CTCF_HUMAN | 3.31 | n/a | 2.17 | n/a | No Hit | |||
| CREB1_HUMAN | -0.32 | 1.05 | 1.29 | n/a | No Hit | |||
| AP2A_HUMAN | 1.82 | -1.67 | 2.00 | n/a | No Hit | |||
| BHE40_HUMAN | 1.62 | -1.25 | 1.33 | n/a | No Hit |
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