rs13200192 chr6:170606038 G>A
- Sequence
ctgtacgctggccagaacctctcc[G/A]tcatgggtggtctcttatcaggca
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- REQU_HUMAN IKZF1_HUMAN TIF1A_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| REQU_HUMAN | 1.78 | -1.14 | 1.33 | n/a | n/a | |||
| IKZF1_HUMAN | 1.35 | -1.13 | 1.33 | n/a | No Hit | |||
| TIF1A_HUMAN | 1.66 | -0.60 | 1.17 | n/a | n/a | |||
| HDAC1_HUMAN | 1.41 | -0.93 | 1.33 | n/a | n/a | |||
| MTG16_HUMAN | 1.70 | -1.94 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood