rs1322 chr2:43294028 G>A
- Sequence
aaaccacagcccttcttttttgac[G/A]tggtctactgatggtggtgagtca
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) monocyte-derived macrophages PC3 (prostate carcinoma)
- ASB for transcription factors
- CREB1_HUMAN ESR1_HUMAN FOXA1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 1.50 | -1.35 | 1.33 | n/a | No Hit | |||
| ESR1_HUMAN | 0.52 | 1.47 | 1.62 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.07 | 1.09 | 1.56 | n/a | No Hit | |||
| ANDR_HUMAN | -0.96 | 1.76 | 2.00 | n/a | No Hit | |||
| JUNB_HUMAN | 1.62 | -1.87 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP fasting blood glucose, homa-b, salmonella-induced pyroptosis, serum creatinine, systolic blood pressure (sbp), total cholesterol, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood