rs13379676 chr15:85296936 T>C
- Sequence
ggttaccactctatccaaacacca[T/C]gtcactgagactcacttaggaaga
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- CREB1_HUMAN FOXA1_HUMAN ANDR_HUMAN ERG_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | -0.92 | 2.47 | 1.44 | 4.84 | Concordant | |||
| FOXA1_HUMAN | 1.64 | -0.43 | 1.50 | n/a | No Hit | |||
| ANDR_HUMAN | 1.32 | 0.08 | 1.50 | n/a | No Hit | |||
| ERG_HUMAN | -0.24 | 1.84 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid