rs1345088 chr5:180085390 C>T
- Sequence
gctgattgctttaagcctgagccc[C/T]tgactgcaacagcagataagatga
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF-7L (invasive ductal carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ESR1_HUMAN GATA3_HUMAN GRHL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.74 | 1.72 | 2.50 | n/a | No Hit | |||
| ESR1_HUMAN | 0.51 | 1.02 | 2.92 | n/a | No Hit | |||
| GATA3_HUMAN | -1.17 | 1.95 | 2.70 | n/a | No Hit | |||
| GRHL2_HUMAN | -1.92 | 1.41 | 2.43 | n/a | No Hit | |||
| NFIB_HUMAN | 1.35 | n/a | 2.75 | n/a | n/a |
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