rs13566 chr1:16618914 T>A
- Sequence
ggatgctggaaaccgcgggatagc[T/A]cggtggagagagggcgctcctgct
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) HEK293T (embryonic kidney) GM12878 (female B-cells)
- ASB for transcription factors
- CTCF_HUMAN ZFX_HUMAN FOXK2_HUMAN PRDM9_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.64 | -0.41 | 2.09 | 2.63 | Discordant | |||
| ZFX_HUMAN | 1.88 | -0.69 | 1.96 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.95 | -2.10 | 2.00 | n/a | n/a | |||
| PRDM9_HUMAN | 2.13 | n/a | 2.00 | n/a | n/a | |||
| ZBT17_HUMAN | 2.25 | -2.16 | 1.33 | n/a | No Hit |
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Motif analysis
