rs1380576 chr1:204519150 G>C
- Sequence
acgactaaacagtgcaagataaga[G/C]tgaaaatgtgctgaggggatagac
- ASB in cell types
- K562 (myelogenous leukemia) CD34+ hematopoietic stem cells-derived proerythroblasts
- ASB for transcription factors
- TAF9B_HUMAN ARNT_HUMAN GATA1_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TAF9B_HUMAN | n/a | 2.37 | 2.50 | n/a | n/a | |||
| ARNT_HUMAN | -1.01 | 1.88 | 2.67 | n/a | No Hit | |||
| GATA1_HUMAN | 0.33 | 1.06 | 2.30 | n/a | No Hit | |||
| FOXK2_HUMAN | -2.25 | 1.76 | 2.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP college completion, diastolic blood pressure (dbp), ldl cholesterol, ldl cholesterol change with statins, total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellum, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood