rs138117 chr22:43867960 A>C
- Sequence
taagcttaatctagcagatctcca[A/C]atctcagccctctgatacccattc
- ASB in cell types
- CD34+ bone marrow cell-derived erythroid progenitors H1 (embryonic stem cells)
- ASB for transcription factors
- GATA1_HUMAN REST_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | 1.72 | n/a | 1.50 | n/a | No Hit | |||
| REST_HUMAN | 1.59 | -0.23 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Nerve_Tibial, Spleen, Testis