rs13941 chr11:62672097 G>A
- Sequence
atggttggcggcgaaggcggcgcc[G/A]gcgggaggtcaccgtgagaccgga
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) CD14+ monocytes
- ASB for transcription factors
- MNT_HUMAN SMCA4_HUMAN HDAC1_HUMAN NR2C1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | -0.87 | 1.92 | 2.00 | n/a | n/a | |||
| SMCA4_HUMAN | -1.16 | 1.80 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | -0.47 | 1.78 | 2.00 | n/a | n/a | |||
| NR2C1_HUMAN | -0.39 | 1.73 | 1.78 | -2.41 | Discordant | |||
| HDAC2_HUMAN | -1.06 | 1.83 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood