rs1396149 chr17:78132581 G>C
- Sequence
atgggggggctggcccagggccca[G/C]agcgtggcgacaacgctgggcgtg
- ASB in cell types
- K562 (myelogenous leukemia) thymus-derived CD34- cells GM12878 (female B-cells)
- ASB for transcription factors
- BC11B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BC11B_HUMAN | n/a | 2.07 | 2.25 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Breast_Mammary_Tissue, Esophagus_Mucosa, Heart_Atrial_Appendage, Testis, Thyroid, Whole_Blood