rs139961 chr22:36455160 C>T
- Sequence
ggcgtggctttggagaggtgcccc[C/T]ggcgggctggcggcctggctgcgg
- ASB in cell types
- HEK293 (embryonic kidney) foreskin keratinocyte Peyer's patch MDA-MB-453 (breast adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN ZXDB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.36 | 1.34 | 1.50 | -4.26 | Discordant | |||
| ZXDB_HUMAN | n/a | 2.51 | 2.00 | n/a | n/a |
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Motif analysis
