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rs14122 chr16:21261270 G>C

Sequence
gatcttacccaaagacttgaacac[G/C]gtggtcttctcacagtgggctggt
ASB in cell types
K562 (myelogenous leukemia) liver
ASB for transcription factors
NFIC_HUMAN NCOA2_HUMAN FOSL1_HUMAN JUNB_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NFIC_HUMAN n/a 0.76 1.006.0·10-12 2.00 n/a No Hit
NCOA2_HUMAN -0.81 2.63 0.875.9·10-4 2.00 n/a n/a
FOSL1_HUMAN -2.26 2.33 1.007.3·10-3 2.00 n/a No Hit
JUNB_HUMAN n/a 2.02 1.008.9·10-3 2.00 n/a No Hit
TIF1A_HUMAN -1.99 1.90 1.009.0·10-3 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP anti-tnf treatment response in rheumatoid arthritis (by das-28 score change at 3 months) aortic valve calcium
GTEx eQTL Adipose_Visceral_Omentum Brain_Cerebellum Colon_Transverse Heart_Atrial_Appendage Heart_Left_Ventricle Muscle_Skeletal Small_Intestine_Terminal_Ileum Stomach

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