rs1424753 chr11:57712392 T>C
- Sequence
cttattagagtcttctgctagctc[T/C]gcttgctacagtccaataaaatga
- ASB in cell types
- K562 (myelogenous leukemia) Jurkat (T-cells) HeLa S3 (cervical adenocarcinoma) cranial neural crest cells
- ASB for transcription factors
- MYB_HUMAN EMSY_HUMAN COT1_HUMAN AP2A_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MYB_HUMAN | 1.58 | -1.21 | 1.33 | n/a | No Hit | |||
| EMSY_HUMAN | n/a | 0.41 | 1.50 | n/a | n/a | |||
| COT1_HUMAN | -0.10 | 1.36 | 1.78 | n/a | No Hit | |||
| AP2A_HUMAN | -1.83 | 1.90 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood