rs142564440 chr1:161440500 G>C
- Sequence
gagcccttccccaacaggtgcccg[G/C]gggggaaacggccggcgccggcag
- ASB in cell types
- upper lobe of left lung HepG2 (hepatoblastoma) GM12878 (female B-cells) pancreas
- ASB for transcription factors
- CTCF_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.14 | 0.12 | 1.44 | 1.02 | Weak Discordant | |||
| FOXK2_HUMAN | 1.61 | -1.49 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Whole_Blood