rs1433060 chr19:9435653 C>A
- Sequence
aactgcaacctcagccgagctgaa[C/A]aacctcaggcagagagattctggt
- ASB in cell types
- HepG2 (hepatoblastoma) neural cell neural progenitors H1 (embryonic stem cells)
- ASB for transcription factors
- CTCF_HUMAN CREB1_HUMAN GABPA_HUMAN FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.85 | 0.29 | 1.55 | n/a | No Hit | |||
| CREB1_HUMAN | 1.97 | -0.58 | 1.33 | n/a | No Hit | |||
| GABPA_HUMAN | 1.38 | -1.26 | 1.33 | n/a | No Hit | |||
| FOXA2_HUMAN | 2.42 | -2.46 | 1.33 | n/a | No Hit | |||
| ATF1_HUMAN | 1.99 | -1.00 | 1.33 | n/a | No Hit |
Items per page:
1 – 5 of 7
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pituitary, Testis, Thyroid