rs1441043 chr13:110715303 A>G
- Sequence
gggcaaaaaaaaaaattgaccgct[A/G]tccccgaaagtactagacgcctct
- ASB in cell types
- thymus-derived CD34- cells Th1-cells CD14+ monocytes GM12878 (female B-cells)
- ASB for transcription factors
- BC11B_HUMAN MAF_HUMAN STAT1_HUMAN PO2F1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BC11B_HUMAN | n/a | 2.96 | 2.50 | n/a | n/a | |||
| MAF_HUMAN | -3.72 | 2.49 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 0.38 | 2.10 | 2.21 | n/a | No Hit | |||
| PO2F1_HUMAN | n/a | 1.57 | 2.50 | n/a | No Hit | |||
| CTCF_HUMAN | 0.36 | 0.52 | 1.30 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood