rs1443142 chr17:77086705 T>G
- Sequence
ccagggggcagaggtagggccatg[T/G]agtagacgcctgtagttttcgcct
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) keratinocytes SK-N-SH (neuroblastoma)
- ASB for transcription factors
- SNAI2_HUMAN SMC3_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 2.65 | -3.52 | 1.50 | n/a | No Hit | |||
| SMC3_HUMAN | 1.64 | 0.88 | 2.92 | n/a | n/a | |||
| RAD21_HUMAN | 1.44 | 1.04 | 2.80 | n/a | n/a |
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