rs144381821 chr2:113603938 G>C
- Sequence
cagagacgcacgtcgctgggctga[G/C]ggtggcggggagtgttgcagtcgt
- ASB in cell types
- LNCaP (prostate carcinoma) neutrophils HCC1954 (ductal breast carcinoma) NB69 (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN CREB1_HUMAN NRF1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.94 | 0.61 | 1.46 | -0.88 | Weak Concordant | |||
| CREB1_HUMAN | 1.56 | 0.46 | 1.60 | n/a | No Hit | |||
| NRF1_HUMAN | 1.65 | 0.14 | 1.92 | n/a | No Hit | |||
| RAD21_HUMAN | 1.54 | -1.43 | 1.33 | n/a | n/a |
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Motif analysis
