rs1464954 chr4:82739534 C>T
- Sequence
ggtcgtggctggtagagccacact[C/T]cgcctgctggttgtgtgcggtggt
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells) HepG2 (hepatoblastoma) pancreas
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN ZN143_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.29 | -0.01 | 1.42 | -2.18 | Concordant | |||
| RAD21_HUMAN | 1.31 | 0.24 | 1.27 | n/a | n/a | |||
| SMC3_HUMAN | 1.18 | -0.15 | 1.18 | n/a | n/a | |||
| ZN143_HUMAN | 2.07 | -1.51 | 1.17 | n/a | No Hit | |||
| SRF_HUMAN | 1.11 | -0.61 | 1.47 | n/a | No Hit |
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Motif analysis
