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rs1467537 chr14:100654937 T>C

Sequence
ggacccggctcacctgagcgaagg[T/C]tgcggcctcgctggccgcctctgc
ASB in cell types
A549 (lung carcinoma)
ASB for transcription factors
RAD21_HUMAN CTCF_HUMAN SMC3_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RAD21_HUMAN 1.36 -0.02 1.1·10-41.00 1.91 n/a n/a
CTCF_HUMAN 0.88 0.65 0.381.5·10-4 1.56 n/a No Hit
SMC3_HUMAN 1.33 -0.25 6.0·10-41.00 2.08 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP total cholesterol type 1 diabetes, end stage renal disease
GTEx eQTL Lung Pituitary

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