rs1467538 chr14:100655034 G>T
- Sequence
acctgcgtggctggctccgccagg[G/T]cctgacctccctcctggtgccttt
- ASB in cell types
- A549 (lung carcinoma) NB69 (neuroblastoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.89 | 0.35 | 1.56 | n/a | No Hit | |||
| RAD21_HUMAN | 1.10 | -0.15 | 1.99 | n/a | n/a | |||
| SMC3_HUMAN | 0.88 | -0.17 | 2.08 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, advanced age-related macular degeneration (geographic atrophy), diastolic blood pressure (dbp)