rs146927083 chr1:43389955 G>C
- Sequence
accctcactggcccgggccggcgc[G/C]ggagggctgtgtgatggcctcgga
- ASB in cell types
- HEK293 (embryonic kidney) HEK293T (embryonic kidney)
- ASB for transcription factors
- SP2_HUMAN ZBT11_HUMAN ZN398_HUMAN ZBT26_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP2_HUMAN | 0.97 | -2.65 | 2.00 | 1.11 | Weak Discordant | |||
| ZBT11_HUMAN | 2.66 | n/a | 2.00 | n/a | n/a | |||
| ZN398_HUMAN | 2.58 | n/a | 2.00 | n/a | n/a | |||
| ZBT26_HUMAN | 2.55 | n/a | 2.00 | n/a | n/a | |||
| ZBT8A_HUMAN | 2.43 | n/a | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood