rs1471247 chr10:60314522 T>C
- Sequence
gaaatgcaaatgagggcacacttc[T/C]gggaatctgtgttatatgagtagt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ELF1_HUMAN FOS_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | -2.32 | 1.92 | 1.33 | 6.63 | Concordant | |||
| FOS_HUMAN | -1.05 | 1.36 | 1.56 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP bipolar disorder, body mass index (bmi), diastolic blood pressure (dbp), maternal transmission distortion, sporadic creutzfeldt-jakob disease, stabilized warfarin dose, systolic blood pressure (sbp), transmission distortion
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Pancreas, Thyroid